Pediatric Neuro-oncology Cell Atlas
Pediatric Neuro-oncology Cell Atlas
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Cell Atlases
A survey of childhood Ependymoma
scRNA-seq of 26 childhood ependymoma samples
UCSC Cell Browser
GEO dataset
Manuscript
Single-cell RNA-seq of childhood medulloblastoma
scRNA-seq of 28 childhood medulloblastoma samples
UCSC Cell Browser
GEO dataset
Publication
Preprint
Analysis Code
Spatial transcriptomic analysis of the ependymoma tumor microenvironment
Spatial transcriptomics of posterior fossa subgroup A (PFA) Ependymoma
Publication
GEO dataset
Shiny App
Preprint
Single-nuclei RNA-seq of childhood PFA Ependymoma recurrence
snRNA-seq of 7 matched primary and first recurrence childhood EPN PFA samples
UCSC Cell Browser
GEO dataset
Manuscript
Characterizing the immunobiology of high risk pediatric ependymoma
Multi-Omic approach identifies hypoxic tumor-associated myeloid cells that drive immunobiology of high risk pediatric ependymoma
UCSC Cell Browser
Publication
Single-cell RNA-seq of pediatric high-grade glioma
scRNA-seq of 19 pediatric high-grade glioma (PHGG) patient samples
UCSC Cell Browser
Publication
GEO dataset
Integration of single-nuclei RNA-sequencing and spatial transcriptomics defines the complex microenvironment of NF1-associated plexiform neurofibromas
single nuclei RNA-seq and spatial transcriptomics of plexiform neurofibromas
UCSC Cell Browser
GEO dataset
Publication
Multi-pronged analysis of pediatric low-grade glioma reveals a unique tumor microenvironment associated with BRAF alterations
scRNA-seq of 23 pediatric low-grade glioma (pLGG) patient samples
UCSC Cell Browser
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